Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 10 threads; openjdk version "11.0.13" 2021-10-19; /Data/Tools/juicer1.6_compact/scripts/juicer.sh -t 10 -D /Data/Tools/juicer1.6_compact -g hg19 -z /Data/DataBases/hg19_Canonic/hg19.fa -p /Data/DataBases/hg19_Canonic/hg19.chrom.sizes -s MboI -y /Data/DataBases/hg19_Canonic/hg19_MboI.txt -d /Data/NGS_Data/20210714_INC_COST_3DBenchmark/hg19_new/K562                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             
Sequenced Read Pairs:  1,366,228,845
 Normal Paired: 1,049,602,456 (76.82%)
 Chimeric Paired: 195,642,321 (14.32%)
 Chimeric Ambiguous: 42,307,008 (3.10%)
 Unmapped: 78,677,060 (5.76%)
 Ligation Motif Present: 523,839,148 (38.34%)
Alignable (Normal+Chimeric Paired): 1,245,244,777 (91.14%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2022-02-25T12:01:08,663]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 1,121,145,213 (82.06%)
PCR Duplicates: 124,099,564 (9.08%)
Optical Duplicates: 0 (0.00%)
Library Complexity Estimate: 5,825,173,565
Intra-fragment Reads: 13,396,958 (0.98% / 1.19%)
Below MAPQ Threshold: 151,933,188 (11.12% / 13.55%)
Hi-C Contacts: 955,815,067 (69.96% / 85.25%)
 Ligation Motif Present: 347,082,727  (25.40% / 30.96%)
 3' Bias (Long Range): 69% - 31%
 Pair Type %(L-I-O-R): 25% - 25% - 25% - 25%
Inter-chromosomal: 216,860,638  (15.87% / 19.34%)
Intra-chromosomal: 738,954,429  (54.09% / 65.91%)
Short Range (<20Kb): 221,620,918  (16.22% / 19.77%)
Long Range (>20Kb): 517,332,112  (37.87% / 46.14%)